Viral Contigs Predicted from Metagenomes: MAGs, SAGs, and Transcriptome from under the Ross Ice Shelf (HWD2), 2017
This metadata record represents the data for generated by mining single-cell genomic, transcriptomic, and metagenomic data to uncover the viral diversity, biogeography, activity, and their role as metabolic facilitators of microbes beneath the Ross Ice Shelf.
Hot drilling and seawater sampling was conducted from the sub-shelf water column in the central region of the RIS (Latitude −80.6577 N, Longitude 174.4626 W). The sampling site was located ≈300 km from the shelf front. A borehole (30 cm diameter) conducted by hot water drilling was used for direct sampling of seawater from three depths (400 m, 550 m, and 700 m from the top of the shelf, which correspond to 30 m, 180 m, and 330 m from the bottom of the ice shelf, respectively). Seawater samples were processed accordingly for single cell genomics, metagenomics, and transcriptomics as described, and the resulting assembled and co-assembled contigs (min. length 1 kb) from single-amplified genomes, bins and transcriptomics were mined for detecting viral contigs.
Further details are provided at https://doi.org/10.1038/s41467-023-44028-x
Simple
Identification info
- Date (Creation)
- 2023-12-14T00:00:00
- Date (Publication)
- 2023-12-14T00:00:00
- Citation identifier
- https://doi.org/10.6084/m9.figshare.24581331
- Presentation form
- Status
- Completed
- Point of contact - Custodian, Owner, etc
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Role Organisation Individual Electronic mail address Author Lopez-Simon, J. Co-author Vila-Nistal, M. Co-author Rosenova, A. Co-author De Corte, D. Co-author Baltar, F. federico.baltar@univie.ac.at Co-author Martinez-Garcia, M. m.martinez@ua.es Publisher Figshare support@figshare.com
- Spatial representation type
- Topic category
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- Biota
Extent
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Temporal extent
- Time period
- 2017-12-11T00:00:00 2017-12-19T12:00:00
- Keywords
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- ROSS ICE SHELF
- METAGENOMICS
- HWD2
- K061A
- GCMD Earth Science and Earth Science Services Keywords
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- VIRUSES
- BACTERIA/ARCHAEA
- ICE SHELVES
- GCMD Platform/Sources Keywords
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- Ice Shelf
- GCMD Locations Keywords
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- ANTARCTICA
- GCMD Project Keywords
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- ASP
- Aotearoa New Zealand Ross Ice Shelf Programme
- Resource constraints
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Legal constraints Access constraints Use constraints Constraint application scope This data set conforms to the CC BY Attribution License (https://creativecommons.org/licenses/by/4.0/) License License Dataset
- Language
- English
- Character encoding
- UTF8
- Supplemental Information
- Any additional comments about this dataset
Distribution Information
- Distribution format
-
- Metadata constraints
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Legal constraints Access constraints Use constraints Constraint application scope This data set conforms to the CC BY Attribution License (https://creativecommons.org/licenses/by/4.0/) License License Metadata
Metadata
- Metadata identifier
- urn:uuid/60782a7c-8574-48dc-8b60-e460ab552f9f
- Language
- English
- Character encoding
- anyValidURI
- Metadata Contact
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Role Organisation Individual Electronic mail address Point of contact Antarctica New Zealand adminteam@antarcticanz.govt.nz
Type of resource
- Resource scope
- Dataset
- Metadata linkage
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Name Linkage (URL) Protocol Function Description https://doi.org/10.6084/m9.figshare.24581331 Complete Metadata
- Date info (Revision)
- 2024-08-23T00:15:41.593Z
- Date info (Creation)
- 2024-03-18T02:59:02
Metadata standard
- Format name
- ISO 19115-1
- Edition
- 2018
Overviews
Spatial extent
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